If there’s nothing in the db log, it means those files are somehow sent unchanged as updates to the db. I did changes to how existing items in the db are checked for deleted and ignored ones, so that’s a suspect. Unfortunately debug logging is (too) sparse there. I opened a PR with more debug logging, it would be great if you could run that and report back if something about those files turns up in there (scanner debug facility isn’t actually needed): https://github.com/syncthing/syncthing/pull/6918
Deleted items don’t get removed from db, that’s not a problem.
This file isn’t present on disk. When I started Syncthing after the upgrade, I made sure the node had no connection to other Syncthing nodes and kept it offline.
The STTRACE log doesn’t show any errors as far as I can tell.
After that, I updated devB as well and put devB+devC online. They show recent changes that are expected and contain my files I’ve changed yesterday. All good so far.